Researchers have long been searching for new medicines, but the process of trawling through massive collections of chemical compounds to find those that could become lifesaving therapies is tedious and time-consuming. Now, a team of scientists has made breakthrough using artificial intelligence (AI) to speed up this process.
According to Hongkui Deng, a cell biologist who was not involved in the work, the new AI method is "a powerful blueprint for the future" which creates a 'smart' screening system that learns from its own experiments. This could be game-changer in drug discovery as it can evaluate how compounds perturb entire networks of gene activity.
In traditional drug discovery methods, researchers would test tens of thousands of compounds on cells grown in laboratory to identify those with potential therapeutic effects. However, this method is expensive and laborious, especially when integrating large screens with complex assays.
To find a tractable way to harness genomic data, Alex Shalek, a biomedical engineer at the Massachusetts Institute of Technology, teamed up with other researchers and Cellarity, a biotechnology company. Together, they trained a deep-learning model called DrugReflector on publicly available data about how each chemical compound affects gene activity in more than 50 kinds of cells.
The team used DrugReflector to find chemicals that can affect the generation of platelets and red blood cells - a characteristic that could be useful in treating some blood conditions. They then tested 107 of these chemicals to determine whether they had the predicted effect. Overall, the team found that DrugReflector was up to 17 times more effective at finding relevant compounds than traditional drug screening methods.
Moreover, when the researchers incorporated the data from their first round of screening into the model, its success rate doubled. This breakthrough could potentially turbocharge the hunt for new medicines by harnessing the power of AI and genomic data.
According to Hongkui Deng, a cell biologist who was not involved in the work, the new AI method is "a powerful blueprint for the future" which creates a 'smart' screening system that learns from its own experiments. This could be game-changer in drug discovery as it can evaluate how compounds perturb entire networks of gene activity.
In traditional drug discovery methods, researchers would test tens of thousands of compounds on cells grown in laboratory to identify those with potential therapeutic effects. However, this method is expensive and laborious, especially when integrating large screens with complex assays.
To find a tractable way to harness genomic data, Alex Shalek, a biomedical engineer at the Massachusetts Institute of Technology, teamed up with other researchers and Cellarity, a biotechnology company. Together, they trained a deep-learning model called DrugReflector on publicly available data about how each chemical compound affects gene activity in more than 50 kinds of cells.
The team used DrugReflector to find chemicals that can affect the generation of platelets and red blood cells - a characteristic that could be useful in treating some blood conditions. They then tested 107 of these chemicals to determine whether they had the predicted effect. Overall, the team found that DrugReflector was up to 17 times more effective at finding relevant compounds than traditional drug screening methods.
Moreover, when the researchers incorporated the data from their first round of screening into the model, its success rate doubled. This breakthrough could potentially turbocharge the hunt for new medicines by harnessing the power of AI and genomic data.